•  Wen, S., Ma, D., Zhao, M., Xie, L., Wu, Q., Gou, L., Zhu, C., Fan, Y., Wang H. & Yan, J.* (2020) Spatiotemporal single-cell analysis of gene expression in the mouse suprachiasmatic nucleus. Nat. Neurosci. In press: In press
•  Fan, Z., Zhao, M., Joshi, P., Li, P., Zhang, Y., Guo, W., Xu, Y., Wang, H., Zhao, Z., (2017) A class of circadian long non-coding RNAs mark enhancers modulating long-range circadian gene regulation. Nucleic. Acids. Res. 45: 5720-5738
•  Xu, Y., Guo, W., Li, P., Zhang, Y., Zhao, M., Fan, Z., Zhao, Z., Yan, J.* (2016) Long-range chromosome interactions mediated by cohesin shape circadian gene expression. Plos Genet. 12: e1005992
•  Li, Y., Li, G., G?rling, B., Luy, B., Du, J., and Yan, J. (2015) Integrative Analysis of Circadian Transcriptome and Metabolic Network Reveals the Role of de novo Purine Synthesis in Circadian Control of Cell Cycle. Plos Comput.Biol. 11: e1004086
•  Liu, J., Wang, X., Li, J., Wang, H., Wei, G., Yan, J.* (2014) Reconstruction of the Gene Regulatory Network Involved in the Sonic Hedgehog Pathway with a Potential Role in Early Development of the Mouse Brain. Plos Comput.Biol. 10: e1003884
•  Liu, Y., Hu, W., Murakawa, Y., Yin, J., Wang, G., Landthaler, M., and Yan, J. (2013) Cold-induced RNA-binding proteins regulate circadian gene expression by controlling alternative polyadenylation. Sci.Rep. 3: 2054
•  Li, Y., Li, G., Wang, H., Du, J., and Yan, J. (2013) Analysis of a gene regulatory cascade mediating circadian rhythm in zebrafish. Plos Comput.Biol. 9: e1002940
•  Wang, H., Liu, Y., Briesemann, M., and Yan, J. (2010) Computational Analysis of Gene Regulations in Animal Sleep Deprivation. Physiol Genomics 42: 427-36
•  Shao, C., Liu, Y., Ruan, H., Li, Y., Wang, H., Kohl, F., Goropashnaya, A.V., Fedorov, V.B., Zeng, R., Barnes, B.M., Yan, J. (2010) Shotgun proteomics analysis of hibernating arctic ground squirrels. Mol. Cell Proteomics 9: 313-26
•  Yan, J., Wang, H., Liu, Y., and Shao, C. (2008) Analysis of gene regulatory networks in the mammalian circadian rhythm. Plos Comput.Biol. 4: e1000193
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